--- /dev/null
+PCI: imx6: fix occasional link failure
+
+According to the IMX6 reference manuals, REF_SSP_EN (Reference clock enable
+for SS function) must remain deasserted until the reference clock is running
+at the appropriate frequency.
+
+Without this patch we find a high link failure rate (>5%) on certain
+IMX6 boards at various temperatures.
+
+Signed-off-by: Tim Harvey <tharvey@gateworks.com>
+
+--- a/drivers/pci/host/pci-imx6.c
++++ b/drivers/pci/host/pci-imx6.c
+@@ -262,11 +262,6 @@ static int imx6_pcie_deassert_core_reset
+ if (gpio_is_valid(imx6_pcie->power_on_gpio))
+ gpio_set_value(imx6_pcie->power_on_gpio, 1);
+
+- regmap_update_bits(imx6_pcie->iomuxc_gpr, IOMUXC_GPR1,
+- IMX6Q_GPR1_PCIE_TEST_PD, 0 << 18);
+- regmap_update_bits(imx6_pcie->iomuxc_gpr, IOMUXC_GPR1,
+- IMX6Q_GPR1_PCIE_REF_CLK_EN, 1 << 16);
+-
+ ret = clk_prepare_enable(imx6_pcie->sata_ref_100m);
+ if (ret) {
+ dev_err(pp->dev, "unable to enable sata_ref_100m\n");
+@@ -294,6 +289,12 @@ static int imx6_pcie_deassert_core_reset
+ /* allow the clocks to stabilize */
+ usleep_range(200, 500);
+
++ /* power up core phy and enable ref clock */
++ regmap_update_bits(imx6_pcie->iomuxc_gpr, IOMUXC_GPR1,
++ IMX6Q_GPR1_PCIE_TEST_PD, 0 << 18);
++ regmap_update_bits(imx6_pcie->iomuxc_gpr, IOMUXC_GPR1,
++ IMX6Q_GPR1_PCIE_REF_CLK_EN, 1 << 16);
++
+ /* Some boards don't have PCIe reset GPIO. */
+ if (gpio_is_valid(imx6_pcie->reset_gpio)) {
+ gpio_set_value(imx6_pcie->reset_gpio, 0);